Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus SCOA6006
NCBI Strain Identifiers SCOA6006
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 17
N50 Contigs 693,062 bp
Longest Contig 1,224,977 bp
Scaffold Count 14
N50 Scaffolds 847,320 bp
Longest Scaffold 1,292,540 bp
Genome Size 2,972,752 bp
Protein Count 2,776
Coding Density 83.42%
GC Percentage 32.70%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_SCOA6006_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02381564
Country USA: Irvine; CA
Date 2014-2-4
Genbank Assembly Accession GCA_000540115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,067
Refseq Category na
Seq Rel Date 2014/02/04
Spanned Gaps 3
Species Taxid 1280
SSU Count 5
Submitter Broad Institute
Taxid 1409503
Total Gap Length 1126
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBQK00000000.1