Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus AMMC6002
NCBI Strain Identifiers AMMC6002
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.78%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 4
23S Count 5
tRNA Count 20
Contig Count 13
N50 Contigs 661,715 bp
Longest Contig 954,399 bp
Scaffold Count 11
N50 Scaffolds 691,957 bp
Longest Scaffold 1,094,394 bp
Genome Size 2,896,250 bp
Protein Count 2,689
Coding Density 83.30%
GC Percentage 32.72%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_AMMC6002_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02381522
Country USA: Irvine; CA
Date 2014-2-4
Genbank Assembly Accession GCA_000539395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,975
Refseq Category na
Seq Rel Date 2014/02/04
Spanned Gaps 2
Species Taxid 1280
SSU Count 4
Submitter Broad Institute
Taxid 1409461
Total Gap Length 913
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBSA00000000.1