Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus M1175
NCBI Strain Identifiers M1175
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 1.22%
CheckM Strain Heterogeneity 92.86
5S Count 0
16S Count 5
23S Count 6
tRNA Count 20
Contig Count 16
N50 Contigs 544,134 bp
Longest Contig 690,449 bp
Scaffold Count 6
N50 Scaffolds 682,109 bp
Longest Scaffold 859,151 bp
Genome Size 2,876,432 bp
Protein Count 2,650
Coding Density 83.42%
GC Percentage 32.87%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_M1175_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02360841
Country USA: Boston; MA; USA
Date 2014-2-3
Genbank Assembly Accession GCA_000532775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nares
Latitude Longitude None
Molecule Count N/A
CDS Count 2,934
Refseq Category na
Seq Rel Date 2014/02/03
Spanned Gaps 10
Species Taxid 1280
SSU Count 5
Submitter Broad Institute
Taxid 1402684
Total Gap Length 3973
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAXA00000000.1