Clostridioides difficile
Isolate HQ 5S/16S/23S 3 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile E9
NCBI Strain Identifiers E9
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 2
tRNA Count 3
Contig Count 396
N50 Contigs 28,572 bp
Longest Contig 98,137 bp
Scaffold Count 373
N50 Scaffolds 29,903 bp
Longest Scaffold 98,137 bp
Genome Size 4,156,306 bp
Protein Count 3,930
Coding Density 83.87%
GC Percentage 28.85%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name E9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3138915
Country None
Date 2013-10-15
Genbank Assembly Accession GCA_000531695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,018
Refseq Category na
Seq Rel Date 2013/10/15
Spanned Gaps 23
Species Taxid 1496
SSU Count 1
Submitter LPBA
Taxid 1215077
Total Gap Length 230
Translation Table 11
tRNA Count (total) 5
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CAMU00000000.1