Clostridioides difficile
Isolate HQ 5S/16S/23S 7 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile T17
NCBI Strain Identifiers T17
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.47%
CheckM Contamination 0.93%
CheckM Strain Heterogeneity 42.86
5S Count 1
16S Count 2
23S Count 3
tRNA Count 7
Contig Count 466
N50 Contigs 15,881 bp
Longest Contig 65,315 bp
Scaffold Count 449
N50 Scaffolds 16,071 bp
Longest Scaffold 65,315 bp
Genome Size 3,988,251 bp
Protein Count 3,737
Coding Density 84.00%
GC Percentage 28.33%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name T17
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3138895
Country None
Date 2013-10-15
Genbank Assembly Accession GCA_000530895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,772
Refseq Category na
Seq Rel Date 2013/10/15
Spanned Gaps 17
Species Taxid 1496
SSU Count 1
Submitter LPBA
Taxid 1215076
Total Gap Length 170
Translation Table 11
tRNA Count (total) 8
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CAMT00000000.1