Clostridioides difficile
Isolate HQ 5S/16S/23S 2 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile E28
NCBI Strain Identifiers E28
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 2
tRNA Count 2
Contig Count 278
N50 Contigs 33,442 bp
Longest Contig 186,293 bp
Scaffold Count 274
N50 Scaffolds 33,442 bp
Longest Scaffold 186,293 bp
Genome Size 3,983,867 bp
Protein Count 3,644
Coding Density 83.85%
GC Percentage 28.52%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name E28
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3138888
Country None
Date 2013-10-15
Genbank Assembly Accession GCA_000530595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,722
Refseq Category na
Seq Rel Date 2013/10/15
Spanned Gaps 4
Species Taxid 1496
SSU Count 2
Submitter LPBA
Taxid 1215080
Total Gap Length 40
Translation Table 11
tRNA Count (total) 4
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CAMX00000000.1