Ligilactobacillus salivarius
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus salivarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus salivarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus salivarius; x__Lactobacillus salivarius cp400
NCBI Strain Identifiers
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001435955.1)
Genome Characteristics
CheckM Completeness 98.95%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 11
23S Count 6
tRNA Count 20
Contig Count 135
N50 Contigs 40,825 bp
Longest Contig 84,507 bp
Scaffold Count 89
N50 Scaffolds 48,732 bp
Longest Scaffold 152,599 bp
Genome Size 2,156,840 bp
Protein Count 2,162
Coding Density 86.82%
GC Percentage 32.80%
Ambiguous Bases 9
GTDB representative GCA_001435955.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Lsalivarius_cp400
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3138854
Country None
Date 2014-1-17
Genbank Assembly Accession GCA_000529385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,159
Refseq Category na
Seq Rel Date 2014/01/17
Spanned Gaps 46
Species Taxid 1624
SSU Count 10
Submitter TGAC
Taxid 1273133
Total Gap Length 8728
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CBVR000000000.1