Paracoccus pantotrophus
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Paracoccus; s__Paracoccus pantotrophus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Paracoccus; s__Paracoccus pantotrophus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Paracoccus; s__Paracoccus pantotrophus; x__Paracoccus pantotrophus J40
NCBI Strain Identifiers J40
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003633525.1)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 1.39%
CheckM Strain Heterogeneity 40.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 119
N50 Contigs 77,869 bp
Longest Contig 271,053 bp
Scaffold Count 119
N50 Scaffolds 77,869 bp
Longest Scaffold 271,053 bp
Genome Size 4,244,593 bp
Protein Count 4,148
Coding Density 89.96%
GC Percentage 67.63%
Ambiguous Bases 92
GTDB representative GCA_003633525.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM52661v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02584949
Country None
Date 2014-01-14
Genbank Assembly Accession GCA_000526615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 4,132
Refseq Category na
Seq Rel Date 2014/01/14
Spanned Gaps 0
Species Taxid 82367
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 936051
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAGK00000000.1