Hyphomicrobium sp000253295
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Hyphomicrobiaceae; g__Hyphomicrobium; s__Hyphomicrobium sp000253295
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Hyphomicrobiaceae; g__Hyphomicrobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Hyphomicrobiaceae; g__Hyphomicrobium; s__Hyphomicrobium sp. 802
NCBI Strain Identifiers 802
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000253295.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1
N50 Contigs 4,333,578 bp
Longest Contig 4,333,578 bp
Scaffold Count 1
N50 Scaffolds 4,333,578 bp
Longest Scaffold 4,333,578 bp
Genome Size 4,333,578 bp
Protein Count 4,196
Coding Density 87.64%
GC Percentage 59.47%
Ambiguous Bases N/A
GTDB representative GCA_000253295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM52613v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02584912
Country USA
Date 2014-01-14
Genbank Assembly Accession GCA_000526135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude 47.609 N 122.259 W
Molecule Count N/A
CDS Count 4,127
Refseq Category na
Seq Rel Date 2014/01/14
Spanned Gaps 0
Species Taxid 1112272
SSU Count 1
Submitter JGI
Taxid 1112272
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAFM00000000.1