Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis INS_SEN
NCBI Strain Identifiers INS_SEN
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 18
N50 Contigs 484,455 bp
Longest Contig 1,181,339 bp
Scaffold Count 18
N50 Scaffolds 484,455 bp
Longest Scaffold 1,181,339 bp
Genome Size 4,379,293 bp
Protein Count 4,064
Coding Density 90.40%
GC Percentage 65.62%
Ambiguous Bases 55
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name reference map
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02641515
Country None
Date 2014-01-28
Genbank Assembly Accession GCA_000526115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,212
Refseq Category na
Seq Rel Date 2014/01/28
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter Instituto Nacional de Salud
Taxid 1441926
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAQH00000000.1