Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus DAR5810
NCBI Strain Identifiers DAR5810
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 66.67
5S Count 0
16S Count 5
23S Count 3
tRNA Count 20
Contig Count 34
N50 Contigs 299,970 bp
Longest Contig 749,467 bp
Scaffold Count 17
N50 Scaffolds 1,606,398 bp
Longest Scaffold 1,606,398 bp
Genome Size 2,944,524 bp
Protein Count 2,753
Coding Density 82.79%
GC Percentage 32.81%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_DAR5810_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02383552
Country Colombia
Date 2014-1-31
Genbank Assembly Accession GCA_000525565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Abdominal abscess
Latitude Longitude None
Molecule Count N/A
CDS Count 3,018
Refseq Category na
Seq Rel Date 2014/01/31
Spanned Gaps 17
Species Taxid 1280
SSU Count 5
Submitter Broad Institute
Taxid 1409767
Total Gap Length 20171
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBTP00000000.1