Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Bovismorbificans; x__Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal677
NCBI Strain Identifiers Sal677
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 101
N50 Contigs 80,465 bp
Longest Contig 389,093 bp
Scaffold Count 101
N50 Scaffolds 80,465 bp
Longest Scaffold 389,093 bp
Genome Size 4,634,863 bp
Protein Count 4,347
Coding Density 87.58%
GC Percentage 52.16%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name sal677
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02422693
Country USA: Michigan
Date 2013-12-19
Genbank Assembly Accession GCA_000524745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 4,623
Refseq Category na
Seq Rel Date 2013/12/19
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter OARSA, CFSAN
Taxid 1430429
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZKR00000000.1