Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; x__Mycobacterium avium MAV_120809_2495
NCBI Strain Identifiers MAV_120809_2495
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 2.48%
CheckM Strain Heterogeneity 92.5
5S Count 0
16S Count 1
23S Count 0
tRNA Count 20
Contig Count 97
N50 Contigs 439,566 bp
Longest Contig 2,235,845 bp
Scaffold Count 97
N50 Scaffolds 439,566 bp
Longest Scaffold 2,235,845 bp
Genome Size 5,712,139 bp
Protein Count 5,408
Coding Density 90.04%
GC Percentage 68.88%
Ambiguous Bases 2
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM52399v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02641623
Country USA
Date 2014-1-27
Genbank Assembly Accession GCA_000523995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source bronchoalveolar lavage
Latitude Longitude None
Molecule Count N/A
CDS Count 5,388
Refseq Category na
Seq Rel Date 2014/01/27
Spanned Gaps 0
Species Taxid 1764
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 1335420
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAOO00000000.1