Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; x__Mycobacterium avium MAV_120709_2344
NCBI Strain Identifiers MAV_120709_2344
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 1.09%
CheckM Strain Heterogeneity 66.67
5S Count 0
16S Count 0
23S Count 0
tRNA Count 20
Contig Count 62
N50 Contigs 496,547 bp
Longest Contig 907,532 bp
Scaffold Count 62
N50 Scaffolds 496,547 bp
Longest Scaffold 907,532 bp
Genome Size 5,628,496 bp
Protein Count 5,382
Coding Density 89.72%
GC Percentage 68.82%
Ambiguous Bases N/A
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM52375v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02641622
Country USA
Date 2014-01-27
Genbank Assembly Accession GCA_000523755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 5,382
Refseq Category na
Seq Rel Date 2014/01/27
Spanned Gaps 0
Species Taxid 1764
SSU Count 0
Submitter Institute for Genome Sciences
Taxid 1335419
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAOP00000000.1