Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium sp. MAC_011194_8550
NCBI Strain Identifiers MAC_011194_8550
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 1.44%
CheckM Strain Heterogeneity 93.33
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 167
N50 Contigs 95,402 bp
Longest Contig 333,643 bp
Scaffold Count 167
N50 Scaffolds 95,402 bp
Longest Scaffold 333,643 bp
Genome Size 5,393,830 bp
Protein Count 5,159
Coding Density 90.83%
GC Percentage 69.00%
Ambiguous Bases N/A
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM52363v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02641624
Country USA
Date 2014-1-27
Genbank Assembly Accession GCA_000523635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 5,138
Refseq Category na
Seq Rel Date 2014/01/27
Spanned Gaps 0
Species Taxid 1335321
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 1335321
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAOR00000000.1