Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli BIDMC 3
NCBI Strain Identifiers BIDMC 3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.77%
CheckM Strain Heterogeneity 10.0
5S Count 6
16S Count 2
23S Count 7
tRNA Count 19
Contig Count 18
N50 Contigs 544,288 bp
Longest Contig 1,115,638 bp
Scaffold Count 14
N50 Scaffolds 746,481 bp
Longest Scaffold 2,719,060 bp
Genome Size 5,484,844 bp
Protein Count 5,194
Coding Density 87.98%
GC Percentage 50.37%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_BIDMC_3_V2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02138623
Country None
Date 2014-1-23
Genbank Assembly Accession GCA_000522285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source SWAB; abdominal incision
Latitude Longitude None
Molecule Count N/A
CDS Count 5,570
Refseq Category na
Seq Rel Date 2014/01/23
Spanned Gaps 4
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 1328437
Total Gap Length 5005
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAPP00000000.1