Mycobacterium smegmatis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium smegmatis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycolicibacterium; s__Mycolicibacterium smegmatis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycolicibacterium; s__Mycolicibacterium smegmatis; x__Mycolicibacterium smegmatis MC2 51
NCBI Strain Identifiers MC2 51
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457595.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 96
N50 Contigs 150,887 bp
Longest Contig 310,681 bp
Scaffold Count 96
N50 Scaffolds 150,887 bp
Longest Scaffold 310,681 bp
Genome Size 6,823,739 bp
Protein Count 6,537
Coding Density 92.50%
GC Percentage 67.42%
Ambiguous Bases 23
GTDB representative GCA_001457595.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name MC2_51v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02951866
Country None
Date 2014-01-23
Genbank Assembly Accession GCA_000521845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,712
Refseq Category na
Seq Rel Date 2014/01/23
Spanned Gaps 23
Species Taxid 1772
SSU Count 1
Submitter Institute of Microbiology, Chinese Academy of Sciences
Taxid 1445611
Total Gap Length 23
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAJD00000000.1