Bradyrhizobium elkanii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii; x__Bradyrhizobium elkanii USDA 94
NCBI Strain Identifiers USDA 94
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000379145.1)
Genome Characteristics
CheckM Completeness 99.96%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 174
N50 Contigs 138,573 bp
Longest Contig 478,829 bp
Scaffold Count 164
N50 Scaffolds 138,573 bp
Longest Scaffold 560,775 bp
Genome Size 9,558,895 bp
Protein Count 9,051
Coding Density 83.74%
GC Percentage 63.75%
Ambiguous Bases 702
GTDB representative GCA_000379145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM51922v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02584917
Country USA
Date 2014-01-13
Genbank Assembly Accession GCA_000519225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude 35.772096 N 78.638614 W
Molecule Count N/A
CDS Count 9,000
Refseq Category na
Seq Rel Date 2014/01/13
Spanned Gaps 10
Species Taxid 29448
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 398524
Total Gap Length 5093
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAFC00000000.1