Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinobacteria; o__Streptosporangiales; f__Streptosporangiaceae; g__Spirillospora; s__Spirillospora oligospora
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Thermomonosporaceae; g__Actinomadura; s__Actinomadura oligospora
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Thermomonosporaceae; g__Actinomadura; s__Actinomadura oligospora; x__Actinomadura oligospora ATCC 43269
NCBI Strain Identifiers ATCC 43269
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 0
23S Count 0
tRNA Count 20
Contig Count 39
N50 Contigs 441,953 bp
Longest Contig 1,096,711 bp
Scaffold Count 33
N50 Scaffolds 532,256 bp
Longest Scaffold 1,148,980 bp
Genome Size 9,353,665 bp
Protein Count 8,275
Coding Density 87.92%
GC Percentage 71.99%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM51826v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02584999
Country None
Date 2014-1-13
Genbank Assembly Accession GCA_000518265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count 0
Protein Count 8,222
Refseq Category representative genome
Seq Rel Date 2014/01/13
Spanned Gaps 6
Species Taxid 111804
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1399798
Total Gap Length 2542
Translation Table 11
tRNA Count (total) 68
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JADG00000000.1