Nocardiopsis sp000515115
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptosporangiales; f__Streptosporangiaceae; g__Nocardiopsis; s__Nocardiopsis sp000515115
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__Nocardiopsis sp. CNT312
NCBI Strain Identifiers CNT312
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 68
N50 Contigs 163,724 bp
Longest Contig 340,003 bp
Scaffold Count 62
N50 Scaffolds 172,911 bp
Longest Scaffold 403,132 bp
Genome Size 4,681,465 bp
Protein Count 4,240
Coding Density 86.19%
GC Percentage 71.07%
Ambiguous Bases 71
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM51511v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02597262
Country None
Date 2014-01-07
Genbank Assembly Accession GCA_000515115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 4,199
Refseq Category na
Seq Rel Date 2014/01/07
Spanned Gaps 6
Species Taxid 1137268
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1137268
Total Gap Length 1895
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZXF00000000.1