Micromonospora pacifica_B
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora pacifica_B
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica; x__Salinispora pacifica CNT854
NCBI Strain Identifiers CNT854
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000383995.1)
Genome Characteristics
CheckM Completeness 99.47%
CheckM Contamination 0.49%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 111
N50 Contigs 111,438 bp
Longest Contig 330,213 bp
Scaffold Count 104
N50 Scaffolds 116,877 bp
Longest Scaffold 330,213 bp
Genome Size 5,315,422 bp
Protein Count 4,965
Coding Density 87.28%
GC Percentage 69.71%
Ambiguous Bases 105
GTDB representative GCA_000383995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM51483v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02597248
Country None
Date 2014-01-07
Genbank Assembly Accession GCA_000514835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 4,990
Refseq Category na
Seq Rel Date 2014/01/07
Spanned Gaps 7
Species Taxid 351187
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1137265
Total Gap Length 3720
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZWR00000000.1