Micromonospora pacifica_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora pacifica_A
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica; x__Salinispora pacifica DSM 45548 = CNT-148
NCBI Strain Identifiers CNT-148
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000378825.1)
Genome Characteristics
CheckM Completeness 99.16%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 62
N50 Contigs 201,012 bp
Longest Contig 493,291 bp
Scaffold Count 57
N50 Scaffolds 271,462 bp
Longest Scaffold 493,291 bp
Genome Size 5,061,188 bp
Protein Count 4,768
Coding Density 88.22%
GC Percentage 69.96%
Ambiguous Bases N/A
GTDB representative GCA_000378825.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM51467v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02597240
Country None
Date 2014-01-07
Genbank Assembly Accession GCA_000514675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 4,809
Refseq Category na
Seq Rel Date 2014/01/07
Spanned Gaps 5
Species Taxid 351187
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 999544
Total Gap Length 2014
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZWJ00000000.1