Micromonospora pacifica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora pacifica
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica; x__Salinispora pacifica CNT003
NCBI Strain Identifiers CNT003
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000514775.1)
Genome Characteristics
CheckM Completeness 99.58%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 138
N50 Contigs 97,241 bp
Longest Contig 250,172 bp
Scaffold Count 136
N50 Scaffolds 97,241 bp
Longest Scaffold 250,172 bp
Genome Size 5,469,257 bp
Protein Count 5,032
Coding Density 87.88%
GC Percentage 69.91%
Ambiguous Bases 155
GTDB representative GCA_000514775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM51457v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02597235
Country None
Date 2014-01-07
Genbank Assembly Accession GCA_000514575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 5,058
Refseq Category na
Seq Rel Date 2014/01/07
Spanned Gaps 2
Species Taxid 351187
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1136417
Total Gap Length 305
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZWE00000000.1