Micromonospora pacifica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora pacifica
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Salinispora; s__Salinispora pacifica; x__Salinispora pacifica CNT084
NCBI Strain Identifiers CNT084
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000514775.1)
Genome Characteristics
CheckM Completeness 97.64%
CheckM Contamination 1.41%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 142
N50 Contigs 118,294 bp
Longest Contig 322,962 bp
Scaffold Count 138
N50 Scaffolds 125,612 bp
Longest Scaffold 322,962 bp
Genome Size 5,471,270 bp
Protein Count 5,212
Coding Density 87.30%
GC Percentage 69.56%
Ambiguous Bases 267
GTDB representative GCA_000514775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM51449v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02597231
Country None
Date 2014-01-07
Genbank Assembly Accession GCA_000514495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not provided; submitted under MIGS 2.1
Latitude Longitude None
Molecule Count N/A
CDS Count 5,148
Refseq Category na
Seq Rel Date 2014/01/07
Spanned Gaps 4
Species Taxid 351187
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1136419
Total Gap Length 2514
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZWA00000000.1