Planococcus glaciei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Planococcaceae; g__Planococcus; s__Planococcus glaciei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Planococcaceae; g__Planomicrobium; s__Planomicrobium glaciei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Planococcaceae; g__Planomicrobium; s__Planomicrobium glaciei; x__Planomicrobium glaciei CHR43
NCBI Strain Identifiers CHR43
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900099655.1)
Genome Characteristics
CheckM Completeness 99.34%
CheckM Contamination 1.55%
CheckM Strain Heterogeneity 85.71
5S Count 6
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 103
N50 Contigs 66,943 bp
Longest Contig 442,487 bp
Scaffold Count 103
N50 Scaffolds 66,943 bp
Longest Scaffold 442,487 bp
Genome Size 3,900,800 bp
Protein Count 3,803
Coding Density 87.11%
GC Percentage 47.00%
Ambiguous Bases N/A
GTDB representative GCA_900099655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM51353v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02597356
Country India: Himachal Pradesh
Date 2014-01-06
Genbank Assembly Accession GCA_000513535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Chanda river in cold deserts of Lahaul and Spiti
Latitude Longitude None
Molecule Count N/A
CDS Count 3,734
Refseq Category na
Seq Rel Date 2014/01/06
Spanned Gaps 0
Species Taxid 459472
SSU Count 11
Submitter CSIR-Institute of Himalayan Bioresource Technology, Palampur
Taxid 1273538
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUYR00000000.1