Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. F8092B
NCBI Strain Identifiers F8092B
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 9
N50 Contigs 4,324,437 bp
Longest Contig 4,324,437 bp
Scaffold Count 9
N50 Scaffolds 4,324,437 bp
Longest Scaffold 4,324,437 bp
Genome Size 5,604,406 bp
Protein Count 5,423
Coding Density 87.36%
GC Percentage 50.49%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name E. coli O157
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02304041
Country USA
Date 2013-11-22
Genbank Assembly Accession GCA_000513035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human
Latitude Longitude None
Molecule Count 1
CDS Count 5,882
Refseq Category na
Seq Rel Date 2013/11/22
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter USDA
Taxid 1343836
Total Gap Length 0
Translation Table 11
tRNA Count (total) 106
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVCD00000000.1