Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli FAP1
NCBI Strain Identifiers FAP1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 5
tRNA Count 20
Contig Count 162
N50 Contigs 155,295 bp
Longest Contig 371,506 bp
Scaffold Count 162
N50 Scaffolds 155,295 bp
Longest Scaffold 371,506 bp
Genome Size 5,141,632 bp
Protein Count 4,953
Coding Density 87.71%
GC Percentage 50.49%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name EcoliFAP1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471476
Country None
Date 2013-12-03
Genbank Assembly Accession GCA_000511485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,350
Refseq Category na
Seq Rel Date 2013/12/03
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter University Medical Center Utrecht
Taxid 1412834
Total Gap Length 0
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYKA00000000.1