Photobacterium leiognathi
Isolate HQ 5S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi; x__Photobacterium leiognathi lrivu.4.1
NCBI Strain Identifiers lrivu.4.1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000950415.1)
Genome Characteristics
CheckM Completeness 98.51%
CheckM Contamination 1.03%
CheckM Strain Heterogeneity 22.22
5S Count 2
16S Count 0
23S Count 1
tRNA Count 16
Contig Count 184
N50 Contigs 56,367 bp
Longest Contig 175,089 bp
Scaffold Count 20
N50 Scaffolds 979,827 bp
Longest Scaffold 1,730,671 bp
Genome Size 5,268,214 bp
Protein Count 4,343
Coding Density 76.73%
GC Percentage 40.98%
Ambiguous Bases N/A
GTDB representative GCA_000950415.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM50920v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00036651
Country None
Date 2013-8-20
Genbank Assembly Accession GCA_000509205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,279
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 164
Species Taxid 553611
SSU Count 0
Submitter University of Miyazaki
Taxid 1248232
Total Gap Length 365748
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BANQ00000000.1