Flavonifractor sp000508885
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Oscillospirales; f__Oscillospiraceae; g__Flavonifractor; s__Flavonifractor sp000508885
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; x__unclassified Clostridiales; x__unclassified Clostridiales (miscellaneous); s__Clostridiales bacterium VE202-03
NCBI Strain Identifiers VE202-03
GTDB Type Material Designation not type material
GTDB Representative of Species True (4 genomes in species cluster)
Genome Characteristics
CheckM Completeness 90.97%
CheckM Contamination 2.61%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 907
N50 Contigs 12,608 bp
Longest Contig 107,837 bp
Scaffold Count 907
N50 Scaffolds 12,608 bp
Longest Scaffold 107,837 bp
Genome Size 4,569,182 bp
Protein Count 5,378
Coding Density 87.57%
GC Percentage 59.24%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM50888v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00003479
Country None
Date 2013-07-16
Genbank Assembly Accession GCA_000508885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,994
Refseq Category na
Seq Rel Date 2013/07/16
Spanned Gaps 0
Species Taxid 1232439
SSU Count 1
Submitter The University of Tokyo
Taxid 1232439
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BAHQ00000000.2