Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3489-1
NCBI Strain Identifiers UMEA 3489-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 40.0
5S Count 6
16S Count 7
23S Count 6
tRNA Count 20
Contig Count 22
N50 Contigs 467,153 bp
Longest Contig 960,450 bp
Scaffold Count 7
N50 Scaffolds 4,041,734 bp
Longest Scaffold 4,041,734 bp
Genome Size 4,935,792 bp
Protein Count 4,550
Coding Density 87.82%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3489-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885962
Country Sweden
Date 2013-12-13
Genbank Assembly Accession GCA_000507685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,905
Refseq Category na
Seq Rel Date 2013/12/13
Spanned Gaps 15
Species Taxid 562
SSU Count 4
Submitter Broad Institute
Taxid 1281250
Total Gap Length 26035
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZJO00000000.1