Pseudomonas_E syringae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae KCTC 12500
NCBI Strain Identifiers KCTC 12500
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (85 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 2
N50 Contigs 6,013,067 bp
Longest Contig 6,013,067 bp
Scaffold Count 2
N50 Scaffolds 6,013,067 bp
Longest Scaffold 6,013,067 bp
Genome Size 6,150,048 bp
Protein Count 5,267
Coding Density 88.39%
GC Percentage 58.93%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name PSs_v03
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02404616
Country None
Date 2015-7-20
Genbank Assembly Accession GCA_000507185.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,384
Refseq Category na
Seq Rel Date 2015/07/20
Spanned Gaps 0
Species Taxid 317
SSU Count 5
Submitter KRIBB
Taxid 1420587
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYTM00000000.2