Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pelistega; s__Pelistega indica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Pelistega; s__Pelistega indica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Pelistega; s__Pelistega indica
NCBI Strain Identifiers HM-7
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 1.48%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 147
N50 Contigs 32,277 bp
Longest Contig 89,321 bp
Scaffold Count 147
N50 Scaffolds 32,277 bp
Longest Scaffold 89,321 bp
Genome Size 2,504,912 bp
Protein Count 2,726
Coding Density 87.89%
GC Percentage 38.92%
Ambiguous Bases 118
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name HM07
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02402847
Country India
Date 2013-12-11
Genbank Assembly Accession GCA_000506865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude 18.547098 N 73.831628 E
Molecule Count N/A
CDS Count 2,502
Refseq Category representative genome
Seq Rel Date 2013/12/11
Spanned Gaps 0
Species Taxid 1414851
SSU Count 2
Submitter National Centre for Cell Science
Taxid 1414851
Total Gap Length 0
Translation Table 11
tRNA Count (total) 41
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYSV00000000.1