Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa JD335
NCBI Strain Identifiers JD335
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 2.17%
CheckM Strain Heterogeneity 52.63
5S Count 1
16S Count 2
23S Count 2
tRNA Count 15
Contig Count 1,820
N50 Contigs 6,269 bp
Longest Contig 35,262 bp
Scaffold Count 1,820
N50 Scaffolds 6,269 bp
Longest Scaffold 35,262 bp
Genome Size 6,373,845 bp
Protein Count 6,966
Coding Density 89.57%
GC Percentage 66.43%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name JD335.contigs
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02360655
Country Canada: Toronto
Date 2013-12-11
Genbank Assembly Accession GCA_000506365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 6,980
Refseq Category na
Seq Rel Date 2013/12/11
Spanned Gaps 0
Species Taxid 287
SSU Count 2
Submitter University of Ottawa
Taxid 1403050
Total Gap Length 0
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWZG00000000.1