Undefined name (Failed Quality Check)
Isolate HQ 16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa JD333
NCBI Strain Identifiers JD333
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 96.93%
CheckM Contamination 1.7%
CheckM Strain Heterogeneity 40.0
5S Count 0
16S Count 2
23S Count 4
tRNA Count 15
Contig Count 1,996
N50 Contigs 5,517 bp
Longest Contig 24,188 bp
Scaffold Count 1,996
N50 Scaffolds 5,517 bp
Longest Scaffold 24,188 bp
Genome Size 6,331,120 bp
Protein Count 7,004
Coding Density 89.64%
GC Percentage 66.46%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name JD333.contigs
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02360653
Country Canada: Toronto
Date 2013-12-11
Genbank Assembly Accession GCA_000506345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 6,998
Refseq Category na
Seq Rel Date 2013/12/11
Spanned Gaps 0
Species Taxid 287
SSU Count 3
Submitter University of Ottawa
Taxid 1403048
Total Gap Length 0
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWZE00000000.1