Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa JD315
NCBI Strain Identifiers JD315
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 98.28%
CheckM Contamination 2.58%
CheckM Strain Heterogeneity 58.82
5S Count 1
16S Count 2
23S Count 3
tRNA Count 15
Contig Count 1,913
N50 Contigs 5,728 bp
Longest Contig 26,489 bp
Scaffold Count 1,913
N50 Scaffolds 5,728 bp
Longest Scaffold 26,489 bp
Genome Size 6,392,162 bp
Protein Count 7,050
Coding Density 89.73%
GC Percentage 66.54%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name JD315.contigs
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02360639
Country Canada: Hamilton
Date 2013-12-11
Genbank Assembly Accession GCA_000505985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 7,029
Refseq Category na
Seq Rel Date 2013/12/11
Spanned Gaps 0
Species Taxid 287
SSU Count 3
Submitter University of Ottawa
Taxid 1403034
Total Gap Length 0
Translation Table 11
tRNA Count (total) 29
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWYN00000000.1