Xanthomonas hortorum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas hortorum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas hortorum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas hortorum; x__Xanthomonas hortorum pv. carotae; x__Xanthomonas hortorum pv. carotae str. M081
NCBI Strain Identifiers M081
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002940005.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 287
N50 Contigs 29,662 bp
Longest Contig 91,339 bp
Scaffold Count 1
N50 Scaffolds 5,052,399 bp
Longest Scaffold 5,052,399 bp
Genome Size 5,052,399 bp
Protein Count 4,202
Coding Density 84.88%
GC Percentage 63.84%
Ambiguous Bases N/A
GTDB representative GCA_002940005.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name XHC_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470773
Country None
Date 2013-12-11
Genbank Assembly Accession GCA_000505565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,279
Refseq Category na
Seq Rel Date 2013/12/11
Spanned Gaps 287
Species Taxid 56454
SSU Count 1
Submitter Oregon State University
Taxid 863365
Total Gap Length 28700
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEEU00000000.1