Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Give; x__Salmonella enterica subsp. enterica serovar Give var. 15 str. CFSAN004343
NCBI Strain Identifiers CFSAN004343
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 50.0
5S Count 9
16S Count 7
23S Count 14
tRNA Count 20
Contig Count 143
N50 Contigs 76,600 bp
Longest Contig 253,216 bp
Scaffold Count 143
N50 Scaffolds 76,600 bp
Longest Scaffold 253,216 bp
Genome Size 4,972,238 bp
Protein Count 4,785
Coding Density 87.55%
GC Percentage 52.14%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN004343_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02383571
Country USA:PA
Date 2013-12-10
Genbank Assembly Accession GCA_000505465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source composite fecal sample
Latitude Longitude None
Molecule Count N/A
CDS Count 5,085
Refseq Category na
Seq Rel Date 2013/12/10
Spanned Gaps 0
Species Taxid 28901
SSU Count 14
Submitter FDA
Taxid 1410932
Total Gap Length 0
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYUQ00000000.1