Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Cerro; x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001692
NCBI Strain Identifiers CFSAN001692
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 76
N50 Contigs 131,290 bp
Longest Contig 388,523 bp
Scaffold Count 76
N50 Scaffolds 131,290 bp
Longest Scaffold 388,523 bp
Genome Size 4,705,937 bp
Protein Count 4,454
Coding Density 87.55%
GC Percentage 52.12%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN001692_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02383569
Country USA:PA
Date 2013-12-10
Genbank Assembly Accession GCA_000505325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces from dairy cow
Latitude Longitude None
Molecule Count N/A
CDS Count 4,728
Refseq Category na
Seq Rel Date 2013/12/10
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 1410930
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYUS00000000.1