Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Cerro; x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001681
NCBI Strain Identifiers CFSAN001681
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 82
N50 Contigs 151,097 bp
Longest Contig 314,720 bp
Scaffold Count 82
N50 Scaffolds 151,097 bp
Longest Scaffold 314,720 bp
Genome Size 4,685,594 bp
Protein Count 4,423
Coding Density 87.51%
GC Percentage 52.15%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN001681_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02383566
Country USA:PA
Date 2013-12-10
Genbank Assembly Accession GCA_000505285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces; dairy cow
Latitude Longitude None
Molecule Count N/A
CDS Count 4,696
Refseq Category na
Seq Rel Date 2013/12/10
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 1410927
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYUV00000000.1