Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; sb__Mycobacterium avium subsp. avium; x__Mycobacterium avium subsp. avium 10-9275
NCBI Strain Identifiers 10-9275
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 95.22%
CheckM Contamination 1.63%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 886
N50 Contigs 9,112 bp
Longest Contig 78,873 bp
Scaffold Count 886
N50 Scaffolds 9,112 bp
Longest Scaffold 78,873 bp
Genome Size 4,794,583 bp
Protein Count 5,366
Coding Density 90.75%
GC Percentage 69.12%
Ambiguous Bases 53
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MAA 9275
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470595
Country USA: Minnesota
Date 2013-12-09
Genbank Assembly Accession GCA_000504945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,108
Refseq Category na
Seq Rel Date 2013/12/09
Spanned Gaps 0
Species Taxid 1764
SSU Count 1
Submitter National Animal Disease Center
Taxid 1391991
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYNY00000000.1