Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; x__Mycobacterium avium 05-4293
NCBI Strain Identifiers 05-4293
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 98.07%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 190
N50 Contigs 72,082 bp
Longest Contig 253,428 bp
Scaffold Count 190
N50 Scaffolds 72,082 bp
Longest Scaffold 253,428 bp
Genome Size 5,156,046 bp
Protein Count 5,042
Coding Density 90.56%
GC Percentage 69.23%
Ambiguous Bases 15
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MAA 4293 version 1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470578
Country USA
Date 2013-12-09
Genbank Assembly Accession GCA_000504745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,956
Refseq Category na
Seq Rel Date 2013/12/09
Spanned Gaps 0
Species Taxid 1764
SSU Count 1
Submitter National Animal Disease Center
Taxid 1392002
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYLW00000000.1