Porphyromonas gingivalis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas gingivalis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas gingivalis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas gingivalis; x__Porphyromonas gingivalis SJD2
NCBI Strain Identifiers SJD2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000010505.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 132
N50 Contigs 33,044 bp
Longest Contig 85,472 bp
Scaffold Count 117
N50 Scaffolds 37,197 bp
Longest Scaffold 105,588 bp
Genome Size 2,329,548 bp
Protein Count 2,060
Coding Density 86.61%
GC Percentage 48.38%
Ambiguous Bases 50
GTDB representative GCA_000010505.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name SJD2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470968
Country China
Date 2013-12-4
Genbank Assembly Accession GCA_000503975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source subgingival dental plaque
Latitude Longitude None
Molecule Count N/A
CDS Count 2,054
Refseq Category na
Seq Rel Date 2013/12/04
Spanned Gaps 23
Species Taxid 837
SSU Count 1
Submitter Shanghai Jiao Tong University School of Medicine
Taxid 1211023
Total Gap Length 698
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASYL00000000.1