Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus VIP4-0447
NCBI Strain Identifiers VIP4-0447
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 113
N50 Contigs 305,898 bp
Longest Contig 668,073 bp
Scaffold Count 113
N50 Scaffolds 305,898 bp
Longest Scaffold 668,073 bp
Genome Size 5,367,084 bp
Protein Count 5,018
Coding Density 86.88%
GC Percentage 45.18%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name VIP4-0447
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471137
Country Hong Kong
Date 2013-11-29
Genbank Assembly Accession GCA_000500545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oyster
Latitude Longitude None
Molecule Count N/A
CDS Count 5,194
Refseq Category na
Seq Rel Date 2013/11/29
Spanned Gaps 0
Species Taxid 670
SSU Count 1
Submitter The Chinese University of Hong Kong
Taxid 1408174
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AXNS00000000.1