Bifidobacterium sp000499185
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium sp000499185
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium sp. A11
NCBI Strain Identifiers A11
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 97.41%
CheckM Contamination 1.33%
CheckM Strain Heterogeneity 20.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 38
N50 Contigs 223,528 bp
Longest Contig 613,515 bp
Scaffold Count 38
N50 Scaffolds 223,528 bp
Longest Scaffold 613,515 bp
Genome Size 2,179,294 bp
Protein Count 1,762
Coding Density 88.94%
GC Percentage 60.28%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Bifidobacterium strain A11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02338864
Country USA: Tucson; AZ
Date 2013-11-25
Genbank Assembly Accession GCA_000499185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source honeybee gut
Latitude Longitude None
Molecule Count N/A
CDS Count 1,744
Refseq Category na
Seq Rel Date 2013/11/25
Spanned Gaps 0
Species Taxid 1394176
SSU Count 1
Submitter University of Arizona
Taxid 1394176
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWUO00000000.1