Vagococcus_A lutrae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Vagococcaceae; g__Vagococcus_A; s__Vagococcus_A lutrae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Vagococcus; s__Vagococcus lutrae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Vagococcus; s__Vagococcus lutrae; x__Vagococcus lutrae LBD1
NCBI Strain Identifiers LBD1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003987555.1)
Genome Characteristics
CheckM Completeness 98.9%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 29
N50 Contigs 132,345 bp
Longest Contig 177,633 bp
Scaffold Count 20
N50 Scaffolds 139,032 bp
Longest Scaffold 266,867 bp
Genome Size 1,829,043 bp
Protein Count 1,736
Coding Density 90.41%
GC Percentage 37.67%
Ambiguous Bases N/A
GTDB representative GCA_003987555.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Vagococcus_lutrae
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02597028
Country None
Date 2013-11-21
Genbank Assembly Accession GCA_000498295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal tract
Latitude Longitude None
Molecule Count N/A
CDS Count 1,731
Refseq Category representative genome
Seq Rel Date 2013/11/21
Spanned Gaps 9
Species Taxid 81947
SSU Count 1
Submitter Broad Institute
Taxid 1408226
Total Gap Length 896
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYSH00000000.1