Lactobacillus acidophilus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus acidophilus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus acidophilus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus acidophilus; x__Lactobacillus acidophilus CFH
NCBI Strain Identifiers CFH
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001591845.1)
Genome Characteristics
CheckM Completeness 98.78%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 100.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 19
Contig Count 124
N50 Contigs 45,126 bp
Longest Contig 136,903 bp
Scaffold Count 124
N50 Scaffolds 45,126 bp
Longest Scaffold 136,903 bp
Genome Size 1,970,999 bp
Protein Count 1,927
Coding Density 89.13%
GC Percentage 34.65%
Ambiguous Bases N/A
GTDB representative GCA_001591845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 50cell_lacAci39final
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02401339
Country USA
Date 2013-11-20
Genbank Assembly Accession GCA_000497795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source 50 cells from yogurt starter culture
Latitude Longitude None
Molecule Count N/A
CDS Count 1,945
Refseq Category na
Seq Rel Date 2013/11/20
Spanned Gaps 0
Species Taxid 1579
SSU Count 4
Submitter Los Alamos National Laboratory
Taxid 1421011
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYUB00000000.1