Pseudomonas_E fulva
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E fulva
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas putida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas putida; x__Pseudomonas putida S610
NCBI Strain Identifiers S610
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000730565.1)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 0.13%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 5
23S Count 2
tRNA Count 20
Contig Count 69
N50 Contigs 146,424 bp
Longest Contig 645,928 bp
Scaffold Count 69
N50 Scaffolds 146,424 bp
Longest Scaffold 645,928 bp
Genome Size 4,596,354 bp
Protein Count 4,114
Coding Density 89.72%
GC Percentage 62.01%
Ambiguous Bases 56
GTDB representative GCA_000730565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name EDP1a
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470268
Country USA: TX; College Station
Date 2013-11-19
Genbank Assembly Accession GCA_000497385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source surface-sterilized wheat seeds
Latitude Longitude None
Molecule Count N/A
CDS Count 4,080
Refseq Category na
Seq Rel Date 2013/11/19
Spanned Gaps 0
Species Taxid 303
SSU Count 5
Submitter Los Alamos National Laboratory
Taxid 1399145
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYJQ00000000.1