Pseudomonas_E hunanensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E hunanensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas putida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas putida; x__Pseudomonas putida S12
NCBI Strain Identifiers S12
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003671955.1)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 1.88%
CheckM Strain Heterogeneity 3.85
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 2
N50 Contigs 5,798,534 bp
Longest Contig 5,798,534 bp
Scaffold Count 2
N50 Scaffolds 5,798,534 bp
Longest Scaffold 5,798,534 bp
Genome Size 6,382,434 bp
Protein Count 5,785
Coding Density 88.61%
GC Percentage 61.44%
Ambiguous Bases N/A
GTDB representative GCA_003671955.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM49545v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470872
Country Netherlands
Date 2014-12-18
Genbank Assembly Accession GCA_000495455.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count 2
CDS Count 5,881
Refseq Category na
Seq Rel Date 2014/12/18
Spanned Gaps 0
Species Taxid 303
SSU Count 6
Submitter RWTH Aachen University
Taxid 1215087
Total Gap Length 0
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None