Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae BHN418
NCBI Strain Identifiers BHN418
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 68
N50 Contigs 78,206 bp
Longest Contig 216,464 bp
Scaffold Count 68
N50 Scaffolds 78,206 bp
Longest Scaffold 216,464 bp
Genome Size 2,063,372 bp
Protein Count 2,078
Coding Density 86.12%
GC Percentage 39.61%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name BHN418_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471310
Country Sweden: Stockholm
Date 2013-11-04
Genbank Assembly Accession GCA_000495375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,238
Refseq Category na
Seq Rel Date 2013/11/04
Spanned Gaps 0
Species Taxid 1313
SSU Count 1
Submitter Umea University, Sweden
Taxid 1330041
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASHP00000000.1