Vibrio parahaemolyticus
Isolate HQ 5S/16S 8 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus S017
NCBI Strain Identifiers S017
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 99.95%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 0
tRNA Count 8
Contig Count 345
N50 Contigs 36,112 bp
Longest Contig 164,509 bp
Scaffold Count 345
N50 Scaffolds 36,112 bp
Longest Scaffold 164,509 bp
Genome Size 5,175,677 bp
Protein Count 4,806
Coding Density 87.26%
GC Percentage 45.14%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name S017
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02338878
Country China
Date 2013-09-06
Genbank Assembly Accession GCA_000491835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 4,919
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 0
Species Taxid 670
SSU Count 1
Submitter State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology
Taxid 1394564
Total Gap Length 0
Translation Table 11
tRNA Count (total) 12
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWMS00000000.1